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Originally shared by SBMLMesoRD 1.0 released: MesoRD is a tool for stochastic simulation of reactions and diffusion. In particular, it is an implementation of the Next Subvolume Method, which is an exact method to simulate the Markov process corresponding to the reaction-diffusion master equation. Following version 0.2.0, MesoRD also supports mean-field simulations. For more information, see the MesoRD homepage: http://mesord.sf.net
This new version of MesoRD handles high spatial resolution also for close to diffusion-limited bi-molecular reactions, which has not earlier been possible using conventional spatially discrete stochastic simulation software. This is accomplished by introduction of scale dependent reaction rates based on microscopic reaction parameters as described in Fange et al. (2010) PNAS, 107:19820. The microscopic parameters can now easily be added to the existing SBML models used by MesoRD.
This new version of MesoRD handles high spatial resolution also for close to diffusion-limited bi-molecular reactions, which has not earlier been possible using conventional spatially discrete stochastic simulation software. This is accomplished by introduction of scale dependent reaction rates based on microscopic reaction parameters as described in Fange et al. (2010) PNAS, 107:19820. The microscopic parameters can now easily be added to the existing SBML models used by MesoRD.
MesoRD Project Home Page
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